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ClustalW Multiple Sequence Alignment Results

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Page 1.1
          1            15 16           30 31           45 46           60 61           75 76           90 
    1 SKH --------------- AKYDIKALIGRGSFS RVVRVEHRATRQPYA IKMIETK----YREG REVCES-ELRVLRRV R-HANIIQLVEVFE-     68
    2 APK --------------- DQFERIKTLGTGSFG RVMLVKHMETGNHYA MKILDKQKV-VKLKQ IEHTLN-EKRILQAV N-FPFLVKLEFSFK-     71
    3 D28 --------------- ANYKRLEKVGEGTYG VVYKALDLRPGQGQR VVALKKIRLESEDEG VPSTAIREISLLKEL K-DDNIVRLYDIVHS     74
    4 EE1 --------------- TRFRNVTLLGSGEFS EVFQVEDPVEKTLKY AVKKLKVK--FSGPK ERNRLLQEVSIQRAL KGHDHIVELMDSWEH     73

    5 AF1 --------------- SEVMLSTRIGSGSFG TVYKGKWHGDVAVKI LKVVDPTP-----EQ FQAFRN-EVAVLRKT R---HVNILLFMGYM     66
    6 GFR --------------- TEFKKIKVLGSGAFG TVYKGLWIPEGEKVK IPVAIKELREATSPK ANKEILDEAYVMASV DN-PHVCRLLGICLT     74
    7 FES VLNRAVPKDKWVLNH EDLVLGEQIGRGNFG EVFSGRLRADNTLVA VKSCRETLP----PD IKAKFLQEAKILKQY S-HPNIVRLIGVCT-     84
    8 DGM --------------- DQLVLGRTLGSGAFG QVVEATAHGLSHSQA TMKVAVKMLKSTARS SEKQALMSELYGDLV DYLHRNKHTFLQRHS     75

    9 MOS --------------- EQVCLLQRLGAGGFG SVYKATYRGVPVAIK QVNKCTKN-----RL ASRRSFWAELNVARL R-HDNIVRVVAASTR     69
   10 SVK --------------- MGFTIHGALTPGSEG CVFDSSHPDYPQRVI VKAGWYTS------- ----TSHEARLLRRL D-HPAILPLLDLHVV     63


Page 2.1
          91          105 106         120 121         135 136         150 151         165 166         180 
    1 SKH --------------- --------------- ----------TQERV YMVMELATGGELFDR IIAKG--S------- ---------------     94
    2 APK --------------- --------------- ----------DNSNL YMVMEYVPGGEMFSH LRRIG--R------- ---------------     97
    3 D28 --------------- --------------- ----------DAHKL YLVFEFLDLDLKRYM EGIPKDQP------- ---------------    102
    4 EE1 --------------- --------------- ----------GGFLY MQVELCENGSLDRFL EEQGQLSR------- ---------------    101

    5 AF1 --------------- --------------- ----------TKDNL AIVTQWCEGSSLYKH LHVQET-K------- ---------------     93
    6 GFR --------------- --------------- ----------STVQL ITQLMPFGCLLDYVR EHKDN---------- ---------------     99
    7 FES --------------- --------------- ----------QKQPI YIVMELVQGGDFLTF LRTEG-AR------- ---------------    111
    8 DGM NKHCPPSAELYSNAL PVGFSLPSHLNLTGE SDGGYMDMSKDESID YVPMLDMKGDIKYAD IESPSYMAPYDNYVP SAPERTYRATLINDS    165

    9 MOS --------------- --------------- -------TPAGSNSL GTIIMEFGGNVTLHQ VIYGAAGHPEGDAG- --------EPHCRTG    113
   10 SVK S-------------- --------------- -----------GVTC LVLPKYQADLYTYLS RRLNP---------- ---------------     88


Page 3.1
          181         195 196         210 211         225 226         240 241         255 256         270 
    1 SKH --FTERDATRVLQMV LDGVRYLHALGITHR DLKPENLLYYHPGTD SKIIITDFGLASARK KGDDC--LMKTTCGT PEYIAPEVLVR---K    177
    2 APK --FSEPHARFYAAQI VLTFEYLHSLDLIYR DLKPENLLIDQQG-- -YIQVTDFGFAKR-V KG-----RTWTLCGT PEYLAPEIILS---K    173
    3 D28 --LGADIVKKFMMQL CKGIAYCHSHRILHR DLKPQNLLINKDG-- -NLKLGDFGLARAFG VPLR---AYTHEIVT LWYRAPEVLLGG--K    182
    4 EE1 --LDEFRVWKILVEV ALGLQFIHHKNYVHL DLKPANVMITFEG-- -TLKIGDFGMASVWP VP-----RGMEREGD CEYIAPEVLAN---H    178

    5 AF1 --FQMFQLIDIARQT AQGMDYLHAKNIIHR DMK-SNNIFLHEG-- LTVKIGDFGLATVKS RWSGSQ-QVEQPTGS VLWMAPEVIRMQDNN    177
    6 GFR --IGSQYLLNWCVQI AKGMNYLEDRRLVHR DLAARNVLVKTPQ-- -HVKITDFGLAKLLG AEEKEY-HAEGGKVP IKWMALESILH---R    180
    7 FES --LRMKTLLQMVGDA AAGMEYLESKCCIHR DLAARNCLVTEKN-- -VLKISDFGMSREAA DGIYAA-SGGLRQVP VKWTAPEALNYG---    192
    8 DGM PVLSYTDLVGFSYQV ANGMDFLASKNCVHR DLAARNVLICEGK-- -LVKICDFGLARDIM RDSNYI-SKGSTYLP LKWMAPESIFN---S    248

    9 MOS GQLSLGKCLKYSLDV VNGLLFLHSQSIVHL DLKPANILISEQD-- -VCKISDFGCSEKLE DLLCFQTPSYPLGGT YTHRAPELLKG---E    197
   10 SVK --LGRPQIAAVSRQL LSAVDYIHRQGIIHR DIKTENIFINTPE-- -DICLGDFGAACFVQ GSRSSP-FPYGIAGT IDTNAPEVLAG---D    169


Page 4.1
          271         285 286         300 301         315 316         330 331         345 346         360 
    1 SKH PYTNSVDMWALGVIA YILLSGTMPFEDDNR T-------RLYRQIL RGKYSYSGEPWPSVS NL------------- ------------AKD    235
    2 APK GYNKAVDWWALGVLI YEMAAGYPPFFADQP I-------QIYEKIV SGKVRFPSHFSSDLK DL------------- ------------LRN    231
    3 D28 QYSTGVDTWSIGCIF AEMCNRKPIFSGDSE I-------DQIFKIF RVLGTPNEAIWPDIV YLPDFKPSFPQWRRK DLSQVVPSLDPRGID    265
    4 EE1 LYDKPADIFSLGITV FEAAANIVLPDNGQS W-------QKLRSGD LSDAPRLSSTDNGSS LTSSSRETPAN---- -----SIIGQGGLDR    252

    5 AF1 PFSFQSDVYSYGIVL YELMTGELPYSRDQI I-------FMVGRGY ASPDLSKLYKNCPKA MK------------- --------------R    233
    6 GFR IYTHQSDVWSYGVTV WELMTFGSKPYDGIP A-------SEISSIL EKGERLPQPPICTID VY------------- --------------M    236
    7 FES RYSSESDVWSFGILL WETFSLGASPYPNLS N-------QQTREFV EKGGRLPCPELCPDA VF------------- --------------R    248
    8 DGM LYTTLSDVWSFGILL WEIFTLGGTPYPELP MN------DQFYNAI KRGYRMAQPAHASDE IY------------- --------------E    305

    9 MOS GVTPKADIYSFAITL WQMTTKQAPYSGERQ HI------LYAVVAY DLRPSLSAAVFEDSL PGQ------------ -----------RLGD    258
   10 SVK PYTTTVDIWSAGLVI FETAVHNASLFSAPR GPKRGPCDSQITRII RQAQVHVDEFSPHPE SR------------- --------------L    232


Page 5.1
          361         375 376         390 391         405 406         420 421         435 436         450 
    1 SKH FIDRLLTVDPGARMT ALQALRHPWVVSM-- -----    263
    2 APK LLQVDLTKRFGNLKD GVNDIKNHK------ -----    255
    3 D28 LLDKLLAYDPINRIS ARRAAIHPYFQES-- -----    293
    4 EE1 VVEWMLSPEPRNRPT IDQILATDEVCWV-- -----    280

    5 AF1 LVADCVKKVKEERPL FPQILSSIELLQH-- -----    261
    6 GFR IMVKCWMIDADSRPK FRELIIEFSKMAR-- -----    264
    7 FES LMEQCWAYEPGQRPS FSAIYQEL------- -----    271
    8 DGM IMQKCWEEKFETRPP FSQLVLLLERLLGEG YKKKY    340

    9 MOS VIQRCWRPSAAQRPS ARLLLVDLTSLKA-- -----    286
   10 SVK TSRYRSRAAGNNRPP YTRPAWTRYYKMDID V----    263

Alignment Data (Fasta format)

>SKH
---------------AKYDIKALIGRGSFSRVVRVEHRATRQPYAIKMIE
TK----YREGREVCES-ELRVLRRVR-HANIIQLVEVFE-----------
------------------------------TQERVYMVMELATGGELFDR
IIAKG--S------------------------FTERDATRVLQMVLDGVR
YLHALGITHRDLKPENLLYYHPGTDSKIIITDFGLASARKKGDDC--LMK
TTCGTPEYIAPEVLVR---KPYTNSVDMWALGVIAYILLSGTMPFEDDNR
T-------RLYRQILRGKYSYSGEPWPSVSNL------------------
-------AKDFIDRLLTVDPGARMTALQALRHPWVVSM-------
>APK
---------------DQFERIKTLGTGSFGRVMLVKHMETGNHYAMKILD
KQKV-VKLKQIEHTLN-EKRILQAVN-FPFLVKLEFSFK-----------
------------------------------DNSNLYMVMEYVPGGEMFSH
LRRIG--R------------------------FSEPHARFYAAQIVLTFE
YLHSLDLIYRDLKPENLLIDQQG---YIQVTDFGFAKR-VKG-----RTW
TLCGTPEYLAPEIILS---KGYNKAVDWWALGVLIYEMAAGYPPFFADQP
I-------QIYEKIVSGKVRFPSHFSSDLKDL------------------
-------LRNLLQVDLTKRFGNLKDGVNDIKNHK-----------
>D28
---------------ANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALK
KIRLESEDEGVPSTAIREISLLKELK-DDNIVRLYDIVHS----------
------------------------------DAHKLYLVFEFLDLDLKRYM
EGIPKDQP------------------------LGADIVKKFMMQLCKGIA
YCHSHRILHRDLKPQNLLINKDG---NLKLGDFGLARAFGVPLR---AYT
HEIVTLWYRAPEVLLGG--KQYSTGVDTWSIGCIFAEMCNRKPIFSGDSE
I-------DQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQV
VPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES-------
>EE1
---------------TRFRNVTLLGSGEFSEVFQVEDPVEKTLKYAVKKL
KVK--FSGPKERNRLLQEVSIQRALKGHDHIVELMDSWEH----------
------------------------------GGFLYMQVELCENGSLDRFL
EEQGQLSR------------------------LDEFRVWKILVEVALGLQ
FIHHKNYVHLDLKPANVMITFEG---TLKIGDFGMASVWPVP-----RGM
EREGDCEYIAPEVLAN---HLYDKPADIFSLGITVFEAAANIVLPDNGQS
W-------QKLRSGDLSDAPRLSSTDNGSSLTSSSRETPAN---------
SIIGQGGLDRVVEWMLSPEPRNRPTIDQILATDEVCWV-------
>AF1
---------------SEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVD
PTP-----EQFQAFRN-EVAVLRKTR---HVNILLFMGYM----------
------------------------------TKDNLAIVTQWCEGSSLYKH
LHVQET-K------------------------FQMFQLIDIARQTAQGMD
YLHAKNIIHRDMK-SNNIFLHEG--LTVKIGDFGLATVKSRWSGSQ-QVE
QPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSRDQI
I-------FMVGRGYASPDLSKLYKNCPKAMK------------------
---------RLVADCVKKVKEERPLFPQILSSIELLQH-------
>GFR
---------------TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAI
KELREATSPKANKEILDEAYVMASVDN-PHVCRLLGICLT----------
------------------------------STVQLITQLMPFGCLLDYVR
EHKDN---------------------------IGSQYLLNWCVQIAKGMN
YLEDRRLVHRDLAARNVLVKTPQ---HVKITDFGLAKLLGAEEKEY-HAE
GGKVPIKWMALESILH---RIYTHQSDVWSYGVTVWELMTFGSKPYDGIP
A-------SEISSILEKGERLPQPPICTIDVY------------------
---------MIMVKCWMIDADSRPKFRELIIEFSKMAR-------
>FES
VLNRAVPKDKWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCR
ETLP----PDIKAKFLQEAKILKQYS-HPNIVRLIGVCT-----------
------------------------------QKQPIYIVMELVQGGDFLTF
LRTEG-AR------------------------LRMKTLLQMVGDAAAGME
YLESKCCIHRDLAARNCLVTEKN---VLKISDFGMSREAADGIYAA-SGG
LRQVPVKWTAPEALNYG---RYSSESDVWSFGILLWETFSLGASPYPNLS
N-------QQTREFVEKGGRLPCPELCPDAVF------------------
---------RLMEQCWAYEPGQRPSFSAIYQEL------------
>DGM
---------------DQLVLGRTLGSGAFGQVVEATAHGLSHSQATMKVA
VKMLKSTARSSEKQALMSELYGDLVDYLHRNKHTFLQRHSNKHCPPSAEL
YSNALPVGFSLPSHLNLTGESDGGYMDMSKDESIDYVPMLDMKGDIKYAD
IESPSYMAPYDNYVPSAPERTYRATLINDSPVLSYTDLVGFSYQVANGMD
FLASKNCVHRDLAARNVLICEGK---LVKICDFGLARDIMRDSNYI-SKG
STYLPLKWMAPESIFN---SLYTTLSDVWSFGILLWEIFTLGGTPYPELP
MN------DQFYNAIKRGYRMAQPAHASDEIY------------------
---------EIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKY
>MOS
---------------EQVCLLQRLGAGGFGSVYKATYRGVPVAIKQVNKC
TKN-----RLASRRSFWAELNVARLR-HDNIVRVVAASTR----------
---------------------------TPAGSNSLGTIIMEFGGNVTLHQ
VIYGAAGHPEGDAG---------EPHCRTGGQLSLGKCLKYSLDVVNGLL
FLHSQSIVHLDLKPANILISEQD---VCKISDFGCSEKLEDLLCFQTPSY
PLGGTYTHRAPELLKG---EGVTPKADIYSFAITLWQMTTKQAPYSGERQ
HI------LYAVVAYDLRPSLSAAVFEDSLPGQ-----------------
------RLGDVIQRCWRPSAAQRPSARLLLVDLTSLKA-------
>SVK
---------------MGFTIHGALTPGSEGCVFDSSHPDYPQRVIVKAGW
YTS-----------TSHEARLLRRLD-HPAILPLLDLHVVS---------
-------------------------------GVTCLVLPKYQADLYTYLS
RRLNP---------------------------LGRPQIAAVSRQLLSAVD
YIHRQGIIHRDIKTENIFINTPE---DICLGDFGAACFVQGSRSSP-FPY
GIAGTIDTNAPEVLAG---DPYTTTVDIWSAGLVIFETAVHNASLFSAPR
GPKRGPCDSQITRIIRQAQVHVDEFSPHPESR------------------
---------LTSRYRSRAAGNNRPPYTRPAWTRYYKMDIDV----

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Copy the alignment output (highlighted in green) and choose 'other' for Input sequence format.
Kim C. Worley, Human Genome Sequencing Center, Baylor College of Medicine
sl-help@bcm.tmc.edu