Query sequence sets
random_200.html
random_800.html
Result files can be downloaded with the command:
curl -O https://fasta.bioch.virginia.edu/mol_evol/data/ss_rand5-200_v_qfo_BL50.txt
To download a set of results files automatically:
## for ssearch results:
for m in BL50 BL62 VT10 VT20 VT40 VT80 VT160; do
curl -O https://fasta.bioch.virginia.edu/mol_evol/data/ss_rand5-200_v_qfo_${m}.txt
curl -O https://fasta.bioch.virginia.edu/mol_evol/data/ss_rand5-800_v_qfo_${m}.txt
done
## for BLASTP results:
for m in BLOSUM62 BLOSUM80 PAM30 PAM70
curl -O https://fasta.bioch.virginia.edu/mol_evol/data/blast_rand5-200_v_qfo_${m}.txt
curl -O https://fasta.bioch.virginia.edu/mol_evol/data/blast_rand5-800_v_qfo_${m}.txt
done
SSEARCH result sets (1 query sequence)
ss_rand5-200_v_qfo_BL50.txt
ss_rand5-200_v_qfo_BP62.txt
ss_rand5-200_v_qfo_VT10.txt
ss_rand5-200_v_qfo_VT160.txt
ss_rand5-200_v_qfo_VT20.txt
ss_rand5-200_v_qfo_VT40.txt
ss_rand5-200_v_qfo_VT80.txt
ss_rand5-800_v_qfo_BL50.txt
ss_rand5-800_v_qfo_BP62.txt
ss_rand5-800_v_qfo_VT10.txt
ss_rand5-800_v_qfo_VT160.txt
ss_rand5-800_v_qfo_VT20.txt
ss_rand5-800_v_qfo_VT40.txt
ss_rand5-800_v_qfo_VT80.txt
SSEARCH result sets (10 query sequences)
ss_randall-200_v_qfo_BL50.txt
ss_randall-200_v_qfo_BP62.txt
ss_randall-200_v_qfo_VT10.txt
ss_randall-200_v_qfo_VT160.txt
ss_randall-200_v_qfo_VT20.txt
ss_randall-200_v_qfo_VT40.txt
ss_randall-200_v_qfo_VT80.txt
ss_randall-800_v_qfo_BL50.txt
ss_randall-800_v_qfo_BP62.txt
ss_randall-800_v_qfo_VT10.txt
ss_randall-800_v_qfo_VT160.txt
ss_randall-800_v_qfo_VT20.txt
ss_randall-800_v_qfo_VT40.txt
ss_randall-800_v_qfo_VT80.txt
BLASTP result sets (1 sequence)
blast_rand5-200_v_qfo_BLOSUM62.txt
blast_rand5-200_v_qfo_BLOSUM80.txt
blast_rand5-200_v_qfo_PAM30.txt
blast_rand5-200_v_qfo_PAM70.txt
blast_rand5-800_v_qfo_BLOSUM62.txt
blast_rand5-800_v_qfo_BLOSUM80.txt
blast_rand5-800_v_qfo_PAM30.txt
blast_rand5-800_v_qfo_PAM70.txt
BLASTP result sets (10 sequences)
blast_randall-200_v_qfo_BLOSUM62.txt
blast_randall-200_v_qfo_BLOSUM80.txt
blast_randall-200_v_qfo_PAM30.txt
blast_randall-200_v_qfo_PAM70.txt
blast_randall-800_v_qfo_BLOSUM62.txt
blast_randall-800_v_qfo_BLOSUM80.txt
blast_randall-800_v_qfo_PAM30.txt
blast_randall-800_v_qfo_PAM70.txt
Solutions:
parse_tab.py
parse_tab2.py
parse_tab2n.py