| 5 Nov. Wednesday | ||
|---|---|---|
| 9:00 | Introduction and Overview | Pearson |
| 9:30 | Protein Evolution and Sequence Similarity Searching | Pearson |
| 1:30 | Workshop I: Similarity searching and statistics | |
| 3:30 | Statistics of Sequence Similarity Scores | Altschul |
| 5:00 | Wine and Cheese Reception | |
| 7:30 | Workshop I - Problem discussion | |
| 8:00 | Algorithms for Biological Sequence Comparison | Pearson |
| Suboptimal global alignments | ||
| 6 Nov. Thursday | ||
| 9:00 | Iterated protein database searches with PSI-BLAST | Altschul |
| 11:00 | Workshop II: BLAST/PSI-Blast workshop | |
| 1:30 | Workshop II -- Review | |
| 2:00 | Approaches to Multiple Sequence Alignment/Multiple alignment resources | Smith |
| Multiple alignment resources | ||
| 4:00 | Workshop III: Multiple Sequence Alignment | |
| 7:30 | Workshop III - Review | |
| 8:00 | Hidden Markov Models and Protein Profiles | Pearson |
| 7 Nov. Friday | ||
| 9:00 | Identifying Consensus Sites | Pearson |
| 10:30 | Workshop IV -- Hidden Markov Models | |
| Consensus Sites | ||
| 1:30 | Workshop IV: Review | |
| 2:00 | NCBI Resources for Bioinformatics and Computational Biology | Cooper |
| NCBI Part2 | ||
| 3:30 | Workshop V: Exploring NCBI databases | |
| 7:30 | Workshop V: Review -- Overall Problem Review | |
| 8:00 | Mid-term Exam | |
| Challenging Problems | ||
| 8 Nov. Saturday | ||
| 9:00 | Mid-term exam discussion | |
| 10:30 | The ENSEMBL Database of Genomes I | Overduin |
| Ensembl I part B | ||
| 2:00 | Workshop VI: Using ENSEMBL/BioMart | |
| Exercise Answers | ||
| 4:00 | Alignment algorithms - Large Scale Alignment I | Pearson |
| 7:30 | Workshop VI: Review | |
| 8:00 | NCBI Genome Resources | Cooper |
| 9 Nov. Sunday | ||
| 9:00 | Biological Ontologies | Ashburner |
| 11:00 | Workshop VII: NCBI Genome Resources | |
| 1:30 | Workshop VII: Review | |
| 2:00 | Genome Comparison Biology | Stubbs |
| 3:30 | Workshop VIII: Genome Annotation Workshop | |
| 6:00 | Banquet | |
| 10 Nov. Monday | ||
| 9:00 | ENSEMBL II | Overduin |
| Compara | ||
| 10:30 | Workshop VIII: Advanced ENSEMBL: The Gene set and Comparative Genomics | |
| beta.ensembl.org | ||
| 1:30 | Workshop VIII: Discussion | |
| 2:00 | Genome Comparison Biology II | Stubbs/Nowick |
| Resources for Comparative Genomics | ||
| Decode data | ||
| 3:30 | CSHL Tour - Grace Auditorium | |
| 7:30 | Course Overview | Pearson |
| Final Projects | ||
| 11 Nov. Tuesday | ||
| 8:30 | Project reports/Review/Discussion | |
| 11:30 | Farewell | |
Last updated: Mon Nov 10 17:20:43 2008