ECG2012 - Student Projects

1. RNA-Seq with Model Organisms - Possible data sets: Breast cancer RNA-seq, c.elgans RNA-seq, other human RNA-seq data on SOLiD platform
   

   Amanda,Christian,Rola,Sunniva
   

2. ChIP-Seq with Model Organisms - Possible data sets: 2 human ChIP-seq datasets

   Anna, Barry, Jason, Matt, Zlatka, Luz,
   

3. Copy Number Variation identification - Possible data sets: Dml male vs female DNA seq

4. SNP calling - Possible data sets: comparative mapping of bacterial genome (tuberculosis)

   Barbara, Richard C
   

5. De novo trascriptome assembly - Possible data sets: Bee RNA-seq and naked mole rat RNA-seq

   Colleen, Lisa, Sandra
   

6. Multivariate analysis to understand genomic diversity - Possible data sets: 16s seq from mouse gut and 300 different phage genomes

7. Pulling non organism sequence out of data - Possible data sets: monkey genome infected with viruses

8. De novo genome assembly - Possible data sets: red algae dna seq

   Daryl, Malone, Mike, Nicolas, Minerva
   

9. Human genome variation into Pam1 scoring matrix - data sets: snp calls from human exome sequencing