| 4 Nov. Wednesday | ||
|---|---|---|
| 9:00 | Introduction and Overview | Pearson |
| 9:30 | Protein Evolution and Sequence Similarity Searching | Pearson |
| 1:30 | Workshop I: Similarity searching and statistics | |
| 3:30 | Statistics of Sequence Similarity Scores | Altschul |
| 7:30 | Review | |
| 8:00 | Similarity Searching II - Strategies | Pearson |
| Suboptimal global alignments | ||
| 5 Nov. Thursday | ||
| 9:00 | Iterated protein database searches with PSI-BLAST | Altschul |
| 11:00 | Workshop II: BLAST/PSI-Blast workshop | |
| 1:30 | Review | |
| 2:00 | NCBI Resources for Bioinformatics and Computational Biology | Cooper |
| 3:30 | Workshop III: Exploring NCBI databases | |
| 7:30 | Review | |
| 8:00 | Approaches to Multiple Sequence Alignment | Smith |
| Multiple Alignment Resource List | ||
| 6 Nov. Friday | ||
| 9:00 | Hidden Markov Models and Protein Profiles | Pearson |
| 10:30 | Workshop IV: MSA | |
| Hidden Markov Models | ||
| 1:30 | Review | |
| 2:00 | The ENSEMBL Database of Genomes I | Overduin |
| 3:30 | Workshop V: Ensembl I | |
| 5:00 | Wine and Cheese Reception | |
| 7:30 | Review -- Overall Problem Review | |
| 8:00 | Mid-term Exam | |
| 7 Nov. Saturday | ||
| 9:00 | Mid-term exam discussion | |
| 10:30 | NCBI Genome Resources | Cooper |
| 1:30 | Workshop VI: NCBI Genome Resources | |
| 3:00 | Genome Comparison Biology I | Stubbs |
| 7:00 | Review | |
| 7:30 | Alignment algorithms - Large Scale Alignment I | Pearson |
| 8:30 | Workshop VII: Genome Annotation Workshop A | |
| Genome Annotation Workshop B | ||
| Apollo setup and annotation files | ||
| 8 Nov. Sunday | ||
| 9:00 | Review | |
| 9:30 | Genome Comparison Biology II | Stubbs |
| 11:00 | ENSEMBL II | Overduin |
| Compara | ||
| 2:00 | Workshop VIII: Ensembl II | |
| 3:30 | Consensus Sites | Pearson |
| 6:00 | Banquet | |
| 9 Nov. Monday | ||
| 9:00 | Inferring Function -- Orthology | Thomas |
| 10:30 | Workshop IX: Function | |
| 1:30 | Workshop X: Consensus Sites | |
| 3:30 | CSHL Tour - Grace Auditorium | |
| 7:30 | Course Overview | Pearson |
| Final Projects | ||
| 10 Nov. Tuesday | ||
| 8:30 | Project reports/Review/Discussion | |
| 11:30 | Farewell | |
Last updated: Thu Dec 24 11:30:49 2009