Bioch8142 - Monday/Wednesday 2:00 - 3:30, Friday 1:00 - 2:30, Jordan Hall, BMG Library, 6th floor
Bioch8145 - Monday/Wednesday 10:30 - 12:00, Jordan Hall Rm 7014 (Microbiology)
Friday 10:30 - 12:00, Jordan Hall, BMG Library, 6th floor
Course directors: William R. Pearson, Jordan Hall Rm 6-057, wrp@virginia.edu and
Stefan Bekiranov, sb3de@virginia.edu
| M | 2/11 | Course Overview/Data resources/Intro to Unix 1 Lecture PDF | Pearson |
| W | 2/13 | Unix 2/Bioinformatics Databases -- Scripting (reproducibility), web clients, Databases/file formats Lecture PDF | Pearson |
| F | 2/15 | Unix Lab | Mackey |
| M | 2/18 | Perl 1 -- structure, variables, flow-control Lecture PDF | Pearson |
| W | 2/20 | Perl 2 -- Hashes, Regular Expressions, Debugging Lecture PDF | Pearson |
| F | 2/22 | Lab - Perl programming | |
| M | 2/25 | Perl 3 -- References, functions, Perl Modules Lecture PDF | Pearson |
| W | 2/27 | Bioinfo 1 - Running FASTA, BLAST, databases Lecture PDF | Pearson |
| F | 3/1 | Lab -- Parsing BLAST output | |
| M | 3/4 | Bioinfo 2 - Protein Domain databases Lecture PDF | Pearson |
| W | 3/6 | Perl 4 -- Perl Modules/Linking to databases | Pearson |
| F | 3/8 | Lab -- Linking to protein databases | |
| M | 3/11 | Sequencing Technologies | Hall |
| W | 3/13 | NGS Mapping | Hall |
| F | 3/15 | Lab - BWA, SamTools, IGV | |
| M | 3/18 | Variation | Hall |
| W | 3/20 | Genome Analysis Tools | Quinlan |
| F | 3/22 | Lab - Bed Tools | |
| M | 3/25 | ||
| W | 3/27 | Stats/Null 1a | Bekiranov |
| F | 3/29 | Stats/Null 2a | Bekiranov |
| M | 4/1 | R prog 1a | Bekiranov |
| W | 4/3 | R prog 2a | Bekiranov |
| F | 4/5 | 'R' lab | |
| M | 4/8 | Microarray 1a | Bekiranov |
| W | 4/10 | Microarray 1b | Bekiranov |
| F | 4/12 | Bioconductor | |
| M | 4/15 | RNA Seq 1 - | Mackey |
| W | 4/17 | RNA Seq 2 - EdgeR | Mackey |
| F | 4/19 | Lab - TopHat, CuffLinks, IGV | |
| M | 4/22 | Chip Seq 1 | Bekiranov |
| W | 4/24 | Chip Seq 2 | Bekiranov |
| F | 4/26 | Lab - MACS, IGV | |
| M | 4/29 | Genome Enrichment Analysis | Quinlan |
| W | 5/1 | Pathway Analysis | Bekiranov |
| F | 5/3 | Lab - Enrichment | |
| M | 5/7 | (Cancelled for BMG Symposium) | |
Links to other Computational Biology Courses
Last modified: Thursday, 28-Jun-2018 05:15:54 EDT